A B C D E F G H I L M N O P R S T U V W

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get2DExtractors() - Method in class annotool.io.AlgoXMLParser

get2DExtractorsAr() - Method in class annotool.io.AlgoXMLParser

get3DExtractors() - Method in class annotool.io.AlgoXMLParser

get3DExtractorsAr() - Method in class annotool.io.AlgoXMLParser

getAllStacksOfOneImage(int) - Method in class annotool.io.DataInput

Get one image or ROI with all the stacks.

getAnnotations() - Method in class annotool.gui.model.ModelLoader

getAnnotations() - Method in class annotool.io.DataInput

getAnnotations() - Method in class annotool.io.DirectoryReader

getAnnotations() - Method in class annotool.io.LabelReader

getAnnotationTable() - Method in class annotool.gui.AnnTablePanel

getBar() - Method in class annotool.gui.ExpertFrame

getChainModels() - Method in class annotool.gui.model.ModelLoader

getChainModels() - Method in class annotool.gui.PopUpFrame

getChannel() - Method in class annotool.io.ChainModel

getChannel() - Method in class annotool.io.DataInput

getChildren() - Method in class annotool.gui.AnnImageTable

getChildren() - Method in class annotool.io.DataInput

getChildren() - Method in class annotool.io.DataInputDynamic

Deprecated.

getClassifier() - Method in class annotool.gui.model.Chain

getClassifier() - Method in class annotool.io.ChainModel

getClassifierClassName() - Method in class annotool.gui.model.Chain

getClassifierExternalPath() - Method in class annotool.gui.model.Chain

getClassifierName() - Method in class annotool.io.ChainModel

getClassifiers() - Method in class annotool.io.AlgoXMLParser

getClassifiersAr() - Method in class annotool.io.AlgoXMLParser

getClassName() - Method in class annotool.gui.model.Extractor

getClassName() - Method in class annotool.gui.model.Selector

getClassName() - Method in class annotool.io.Algorithm

getClassNames() - Method in class annotool.gui.AnnImageTable

getClassNames() - Method in class annotool.gui.AnnTablePanel

getClassNames() - Method in class annotool.gui.model.ModelLoader

getClassNames() - Method in class annotool.io.ChainModel

getClassNames() - Method in class annotool.io.DataInput

getClassNames() - Method in class annotool.io.DirectoryReader

getClassnames() - Method in class annotool.io.LabelReader

getClassNamesInfo(HashMap<String, String>) - Static method in class annotool.gui.model.ModelHelper

Gets the HTML formatted string from class names.

getClassParams() - Method in class annotool.gui.model.Chain

getClassParams() - Method in class annotool.io.ChainModel

getColumnClass(int) - Method in class annotool.gui.model.ChainTableModel

getColumnCount() - Method in class annotool.gui.model.ChainTableModel

getColumnName(int) - Method in class annotool.gui.model.ChainTableModel

getData(int, int) - Method in class annotool.io.DataInput

Get the array of the image (2D slice) of a given stackIndex The type of the Object depends on the image type

getData() - Method in class annotool.io.DataInputDynamic

Deprecated. return the pixel data -- use a mask to avoid sign extension such as data[i][j]&0xff The data is for CV mode, or training data in TT mode.

getData(int) - Method in class annotool.io.DataInputDynamic

Deprecated. return the pixel data -- use a mask to avoid sign extension such as data[i][j]&0xff The data is for CV mode, or training data in TT mode.

getDepth() - Method in class annotool.io.DataInput

This method is preferred since it covers both ROI and non-ROI cases This returns the depth if ROI, and the stack size for non-ROI.

getDepthList() - Method in class annotool.io.DataInput

getDescription() - Method in class annotool.gui.model.ChainFilter

getDescription() - Method in class annotool.gui.model.ImageFilter

getDescription() - Method in class annotool.gui.model.ModelFilter

getDescription() - Method in class annotool.gui.model.PDFFilter

getDescription() - Method in class annotool.gui.model.ROIFilter

getDescription() - Method in class annotool.io.Algorithm

getExportDir() - Method in class annotool.gui.ROIParameterPanel

getExtension(File) - Static method in class annotool.gui.model.Utils

getExternalPath() - Method in class annotool.gui.model.Extractor

getExternalPath() - Method in class annotool.gui.model.Selector

getExternalPath() - Method in class annotool.io.Algorithm

getExtractors() - Method in class annotool.gui.model.Chain

getExtractors() - Method in class annotool.io.ChainModel

getFileList() - Method in class annotool.io.DirectoryReader

getFileListArray() - Method in class annotool.io.DirectoryReader

getHeight() - Method in class annotool.io.DataInput

It is the height of the first image (or ROI).

getHeightList() - Method in class annotool.io.DataInput

getHeightList() - Method in class annotool.io.DataInputDynamic

Deprecated.

getImagePlus(int) - Method in class annotool.io.DataInput

Return the ImagePlus object of the given image index.

getImagePlus(int) - Method in class annotool.io.DataInputDynamic

Deprecated.

getImageReadyPanel() - Method in class annotool.gui.LandingPanel

getImageSet() - Method in class annotool.io.ChainModel

getImageSize() - Method in class annotool.io.ChainModel

getImageType() - Method in class annotool.io.DataInput

getIndices() - Method in interface annotool.select.FeatureSelector

Returns the indices of the selected features (an index is between 0 and one less than the number of features).

getLabel() - Method in class annotool.io.ChainModel

getLength() - Method in class annotool.io.DataInput

getLength() - Method in class annotool.io.DataInputDynamic

Deprecated.

getMode() - Method in class annotool.io.ChainModel

getMode() - Method in class annotool.io.DataInput

getModel() - Method in interface annotool.classify.SavableClassifier

Gets the internal model from the classifier

getModelInfo(ArrayList<ChainModel>) - Static method in class annotool.gui.model.ModelHelper

Gets the HTML formatted string including the information from the passed in ArrayList of ChainModel.

getModelLabels() - Method in class annotool.gui.model.ModelLoader

getName() - Method in class annotool.gui.model.Chain

getName() - Method in class annotool.gui.model.Extractor

getName() - Method in class annotool.gui.model.Selector

getName() - Method in class annotool.io.Algorithm

getNumOfAnnotations() - Method in class annotool.io.LabelReader

getNumOfClasses() - Method in class annotool.io.LabelReader

getOutputPanel() - Method in class annotool.gui.ImageReadyPanel

getParam() - Method in class annotool.io.Algorithm

getParamDefault() - Method in class annotool.io.Parameter

getParamDomain() - Method in class annotool.io.Parameter

getParamMax() - Method in class annotool.io.Parameter

getParamMin() - Method in class annotool.io.Parameter

getParamName() - Method in class annotool.io.Parameter

getParams() - Method in class annotool.gui.model.Extractor

getParams() - Method in class annotool.gui.model.Selector

getParamType() - Method in class annotool.io.Parameter

getPnlROIParam() - Method in class annotool.gui.ImageReadyPanel

getProblem() - Method in class annotool.gui.AnnImageTable

getProblem() - Method in class annotool.gui.AnnTablePanel

Gets the problem used for annotation/classification mode

getResult() - Method in class annotool.io.ChainModel

getROIData(int, int, int) - Method in class annotool.io.DataInputROI

Deprecated.

getROIImagePlus(int) - Method in class annotool.io.DataInput

getRowCount() - Method in class annotool.gui.model.ChainTableModel

getSelectedChannel() - Method in class annotool.gui.ImageReadyPanel

getSelectedIndices() - Method in class annotool.gui.model.Selector

getSelectedInterval() - Method in class annotool.gui.ROIParameterPanel

getSelectedMode() - Method in class annotool.gui.ROIParameterPanel

getSelectedRows() - Method in class annotool.gui.AnnImageTable

getSelectors() - Method in class annotool.gui.model.Chain

getSelectors() - Method in class annotool.io.AlgoXMLParser

getSelectors() - Method in class annotool.io.ChainModel

getSelectorsAr() - Method in class annotool.io.AlgoXMLParser

getStackData(int) - Method in class annotool.io.DataInput

Deprecated.

getStackSize() - Method in class annotool.io.DataInput

This is the stack size of the first image in the case of image set.

getStackSize() - Method in class annotool.io.DataInputROI

Deprecated.

getStatsInfo(HashMap<String, String>, Annotation[][], String[]) - Static method in class annotool.gui.model.ModelHelper

Returns a HTML formatted string containing simple annotation statistics

getSupportsProb() - Method in class annotool.gui.model.ModelLoader

getTablePanel() - Method in class annotool.gui.ImageReadyPanel

getTargets() - Method in class annotool.io.DataInput

getTargets(String, String[]) - Method in class annotool.io.LabelReader

getTestingProblem() - Method in class annotool.gui.AnnTablePanel

Gets the problem used for testing part of training/testing mode

getTestingSet() - Method in class annotool.io.ChainModel

getTrainingProblem() - Method in class annotool.gui.AnnTablePanel

Gets the problem used for training only mode, cross validation mode and training part of training/testing mode.

getType() - Method in class annotool.io.Algorithm

getValueAt(int, int) - Method in class annotool.gui.model.ChainTableModel

getWidth() - Method in class annotool.io.DataInput

It is the width of the first image (or ROI).

getWidthList() - Method in class annotool.io.DataInput

getWidthList() - Method in class annotool.io.DataInputDynamic

Deprecated.

getXmlFiles() - Method in class annotool.io.PluginScanner

GRAY16 - Static variable in class annotool.io.DataInput

GRAY32 - Static variable in class annotool.io.DataInput

GRAY8 - Static variable in class annotool.io.DataInput