A B C D E F G H I L M N O P R S T U V W

S

SavableClassifier - Interface in annotool.classify

Savable classifier returns a model (an object of a Serializable class), so that the classifier may be persisted and loaded back to memory for use.

save(File, ArrayList<Chain>) - Method in class annotool.io.ChainIO

saveAnnotationReport(File, Annotation[][], HashMap<String, String>, String[], boolean[], String[], boolean) - Method in class annotool.io.ReportSaver

saveModel(Object, String) - Method in interface annotool.classify.SavableClassifier

Saves a specified model to a specified file

saveRanks(File, ArrayList<Chain>, float[][], int) - Method in class annotool.io.ChainIO

scan() - Method in class annotool.io.PluginScanner

selectFeatures(float[][], int[]) - Method in interface annotool.select.FeatureSelector

Stores features from data and store any relevant values such as the dimensions of data and targets.

selectFeaturesGivenIndices(float[][], int[]) - Method in interface annotool.select.FeatureSelector

Selects features using indices and returns the selected features.

selectGivenIndices(float[], int[]) - Method in class annotool.gui.model.ROIAnnotator

Selects the features based on pre-determined set of indices for a single image

selectGivenIndices(float[], int[]) - Method in class annotool.gui.ROIAnnotator

Selects the features based on pre-determined set of indices for a single image

Selector - Class in annotool.gui.model

Class representing properties of a single selector.

Selector(String) - Constructor for class annotool.gui.model.Selector

setBar(JProgressBar) - Method in class annotool.io.ChainModel

setButtonsEnabled(boolean) - Method in class annotool.gui.AutoCompFrame

setButtonsEnabled(boolean) - Method in class annotool.gui.ImageReadyPanel

setButtonsEnabledOnModelLoad(boolean) - Method in class annotool.gui.ImageReadyPanel

setChainModels(ChainModel[]) - Method in class annotool.gui.PopUpFrame

setChainModelsFromArray(ChainModel[]) - Method in class annotool.gui.model.ModelLoader

setChannel(String) - Method in class annotool.io.ChainModel

setChannel(String) - Method in class annotool.io.DataInput

To set channel for an already constructed object.

setClassifier(String) - Method in class annotool.gui.model.Chain

setClassifier(Classifier) - Method in class annotool.io.ChainModel

setClassifierClass(String) - Method in class annotool.io.ChainModel

setClassifierClassName(String) - Method in class annotool.gui.model.Chain

setClassifierExternalPath(String) - Method in class annotool.gui.model.Chain

setClassifierName(String) - Method in class annotool.io.ChainModel

setClassifierPath(String) - Method in class annotool.io.ChainModel

setClassName(String) - Method in class annotool.gui.model.Extractor

setClassName(String) - Method in class annotool.gui.model.Selector

setClassName(String) - Method in class annotool.io.Algorithm

setClassNames(HashMap<String, String>) - Method in class annotool.io.ChainModel

setClassParams(HashMap<String, String>) - Method in class annotool.gui.model.Chain

setClassParams(HashMap<String, String>) - Method in class annotool.io.ChainModel

setColumnDataIncluded(boolean) - Method in class annotool.gui.TableColumnAdjuster

setColumnHeaderIncluded(boolean) - Method in class annotool.gui.TableColumnAdjuster

setDataNull() - Method in class annotool.io.DataInput

setDataNull() - Method in class annotool.io.DataInputDynamic

Deprecated.

setDescription(String) - Method in class annotool.io.Algorithm

setDynamicAdjustment(boolean) - Method in class annotool.gui.TableColumnAdjuster

setEnabled(boolean) - Method in class annotool.gui.ROIParameterPanel

Enables or disables all the components in this panel

setExportDir(String) - Method in class annotool.gui.ROIParameterPanel

setExternalPath(String) - Method in class annotool.gui.model.Extractor

setExternalPath(String) - Method in class annotool.gui.model.Selector

setExternalPath(String) - Method in class annotool.io.Algorithm

setExtractors(ArrayList<Extractor>) - Method in class annotool.gui.model.Chain

setExtractors(ArrayList<Extractor>) - Method in class annotool.io.ChainModel

setFile(File) - Method in class annotool.gui.model.ModelLoader

setFiles(File[]) - Method in class annotool.gui.model.ModelLoader

setImageSet(String) - Method in class annotool.io.ChainModel

setImageSize(String) - Method in class annotool.io.ChainModel

setIs3D(boolean) - Method in class annotool.gui.ImageReadyPanel

setLabel(String) - Method in class annotool.io.ChainModel

setMenuEnabled(boolean) - Method in class annotool.gui.AnnMenuBar

setMenuEnabled(boolean) - Method in class annotool.gui.AnnotatorGUI

setMode() - Method in class annotool.gui.ImageReadyPanel

setMode(String) - Method in class annotool.io.ChainModel

setModel(Object) - Method in interface annotool.classify.SavableClassifier

Sets an internal model to be used by the classifier

setName(String) - Method in class annotool.gui.model.Chain

setName(String) - Method in class annotool.gui.model.Extractor

setName(String) - Method in class annotool.gui.model.Selector

setName(String) - Method in class annotool.io.Algorithm

setOnlyAdjustLarger(boolean) - Method in class annotool.gui.TableColumnAdjuster

setOutput(String) - Method in class annotool.gui.AnnOutputPanel

setParamDefault(String) - Method in class annotool.io.Parameter

setParamDomain(String[]) - Method in class annotool.io.Parameter

setParameters(HashMap<String, String>) - Method in interface annotool.classify.Classifier

Sets algorithm parameters from para

setParameters(HashMap<String, String>) - Method in interface annotool.extract.FeatureExtractor

Sets algorithm parameters from para

setParameters(HashMap<String, String>) - Method in interface annotool.select.FeatureSelector

Sets algorithm parameters from para

setParamMax(String) - Method in class annotool.io.Parameter

setParamMin(String) - Method in class annotool.io.Parameter

setParamName(String) - Method in class annotool.io.Parameter

setParams(HashMap<String, String>) - Method in class annotool.gui.model.Extractor

setParams(HashMap<String, String>) - Method in class annotool.gui.model.Selector

setParamType(String) - Method in class annotool.io.Parameter

setResult(float) - Method in class annotool.io.ChainModel

setSelectedIndices(int[]) - Method in class annotool.gui.model.Selector

setSelectors(ArrayList<Selector>) - Method in class annotool.gui.model.Chain

setSelectors(ArrayList<Selector>) - Method in class annotool.io.ChainModel

setTestingSet(String) - Method in class annotool.io.ChainModel

setType(String) - Method in class annotool.io.Algorithm

setValueAt(Object, int, int) - Method in class annotool.gui.model.ChainTableModel

showClassLegends() - Method in class annotool.gui.ImageReadyPanel

showKFoldChart(float[]) - Method in class annotool.gui.ResultPanel

showResult(float, int[], Annotation[]) - Method in class annotool.gui.ResultPanel

showStats(HashMap<String, String>, Annotation[][], String[]) - Method in class annotool.gui.ImageReadyPanel

Displays simple statistics for the annotation results

stateChanged(ChangeEvent) - Method in class annotool.gui.ROIParameterPanel

Styles - Class in annotool.gui.model

Defines constants representing styles in pdf report generated.

Styles() - Constructor for class annotool.gui.model.Styles

SYMMETRIC - Static variable in class annotool.gui.ROIParameterPanel