A B C D E F G H I L M N O P R S T U V W

A

accept(File) - Method in class annotool.gui.model.ChainFilter

accept(File) - Method in class annotool.gui.model.ImageFilter

accept(File) - Method in class annotool.gui.model.ModelFilter

accept(File) - Method in class annotool.gui.model.PDFFilter

accept(File) - Method in class annotool.gui.model.ROIFilter

ACResultPanel - Class in annotool.gui

This class represents the result panel that is displayed after the execution of the chains in auto comparison mode.

ACResultPanel(JTabbedPane, int, int, String, ArrayList<Chain>, boolean) - Constructor for class annotool.gui.ACResultPanel

actionPerformed(ActionEvent) - Method in class annotool.gui.ACResultPanel

actionPerformed(ActionEvent) - Method in class annotool.gui.AnnMenuBar

actionPerformed(ActionEvent) - Method in class annotool.gui.AnnoTypePanel

actionPerformed(ActionEvent) - Method in class annotool.gui.AnnOutputPanel

actionPerformed(ActionEvent) - Method in class annotool.gui.AutoCompFrame

actionPerformed(ActionEvent) - Method in class annotool.gui.ChainPanel

actionPerformed(ActionEvent) - Method in class annotool.gui.DirectoryTreeDialogPanel

actionPerformed(ActionEvent) - Method in class annotool.gui.ExpertFrame

actionPerformed(ActionEvent) - Method in class annotool.gui.ImageReadyPanel

actionPerformed(ActionEvent) - Method in class annotool.gui.LandingPanel

actionPerformed(ActionEvent) - Method in class annotool.gui.LegendDialog

actionPerformed(ActionEvent) - Method in class annotool.gui.RoiModeDialogPanel

actionPerformed(ActionEvent) - Method in class annotool.gui.ROIParameterPanel

actionPerformed(ActionEvent) - Method in class annotool.gui.ROITagger

actionPerformed(ActionEvent) - Method in class annotool.gui.TargetFileDialogPanel

addClassifier(String, HashMap<String, String>, String, String) - Method in class annotool.gui.ChainPanel

Adds the supplied classifier to the currently selected chain.

addClassifierParam(String, String) - Method in class annotool.gui.model.Chain

addExtractor(Extractor) - Method in class annotool.gui.ChainPanel

Adds the supplied extractor to the currently selected chain.

addExtractor(Extractor) - Method in class annotool.gui.model.Chain

addExtractor(Extractor) - Method in class annotool.io.ChainModel

addParam(Parameter) - Method in class annotool.io.Algorithm

addParams(String, String) - Method in class annotool.gui.model.Extractor

addParams(String, String) - Method in class annotool.gui.model.Selector

addSelector(Selector) - Method in class annotool.gui.ChainPanel

Adds the supplied selector to the currently selected chain.

addSelector(Selector) - Method in class annotool.gui.model.Chain

addSelector(Selector) - Method in class annotool.io.ChainModel

addTab(String, float[][], ArrayList<String>, ArrayList<Chain>, int, int, String, boolean) - Method in class annotool.gui.AutoCompFrame

adjustColumn(int) - Method in class annotool.gui.TableColumnAdjuster

adjustColumns() - Method in class annotool.gui.TableColumnAdjuster

AlGO_XML - Static variable in class annotool.io.PluginScanner

Algorithm - Class in annotool.io

Represents a single algorithm(extractor, selector, classifier) loaded from the Algorithm.xml file.

Algorithm(String, String) - Constructor for class annotool.io.Algorithm

Algorithm(String, String, String) - Constructor for class annotool.io.Algorithm

AlgoXMLParser - Class in annotool.io

This class loads the algorithms from the xml file, parses it and creates a list of extractor, selector or classifiers that are used in GUI.

AlgoXMLParser() - Constructor for class annotool.io.AlgoXMLParser

AnnImageTable - Class in annotool.gui

This class is responsible for displaying a list of images or roi that are loaded as problem.

AnnMenuBar - Class in annotool.gui

Toolbar and main menu *

AnnMenuBar(AnnotatorGUI) - Constructor for class annotool.gui.AnnMenuBar

AnnotatorGUI - Class in annotool.gui

The main starting point of the application.

AnnotatorGUI(String) - Constructor for class annotool.gui.AnnotatorGUI

annotool.gui - package annotool.gui

annotool.gui.model - package annotool.gui.model

annotool.io - package annotool.io

AnnoTypePanel - Class in annotool.gui

This panel displays the interface to select either ROI annotation or Image annotation when Annotation is selected in the main screen.

AnnoTypePanel(AnnotatorGUI) - Constructor for class annotool.gui.AnnoTypePanel

AnnOutputPanel - Class in annotool.gui

Panel with scrollable text area and clear button.

AnnOutputPanel(Object) - Constructor for class annotool.gui.AnnOutputPanel

AnnTablePanel - Class in annotool.gui

This panel contains either one or two AnnImageTable instances to display problem image/roi list.

AnnTablePanel(JFrame) - Constructor for class annotool.gui.AnnTablePanel

applyModel() - Method in class annotool.gui.model.ModelLoader

Iterates through the arraylist of loaded models and applies each one to the current image set

AutoCompFrame - Class in annotool.gui

This class is for auto comparison mode.

AutoCompFrame(String, boolean, String, DataInput, DataInput, boolean) - Constructor for class annotool.gui.AutoCompFrame