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Serialized Form

Package annotool.classify

Class annotool.classify.LDATrainedModel extends java.lang.Object implements Serializable

serialVersionUID: 1L

Serialized Fields

trainedR

Jama.Matrix trainedR

logDetSigma

double logDetSigma

means

float[][] means

priors

float[] priors

targetMap

java.util.HashMap<K,V> targetMap

Package annotool.gui

Class annotool.gui.ACResultPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

tabIndex

int tabIndex

parentPane

javax.swing.JTabbedPane parentPane

pnlChart

org.jfree.chart.ChartPanel pnlChart

chart

org.jfree.chart.JFreeChart chart

pnlDesc

javax.swing.JPanel pnlDesc

pnlImageInfo

javax.swing.JPanel pnlImageInfo

pnlRunInfo

javax.swing.JPanel pnlRunInfo

pnlDisplay

javax.swing.JPanel pnlDisplay

btnSaveReport

javax.swing.JButton btnSaveReport

lbImgSet

javax.swing.JLabel lbImgSet

lbTestSet

javax.swing.JLabel lbTestSet

lbImgExt

javax.swing.JLabel lbImgExt

lbTestExt

javax.swing.JLabel lbTestExt

lbImgSize

javax.swing.JLabel lbImgSize

lbMode

javax.swing.JLabel lbMode

lbChannel

javax.swing.JLabel lbChannel

selectedChains

java.util.ArrayList<E> selectedChains

taChainDetail

javax.swing.JTextArea taChainDetail

detailPane

javax.swing.JScrollPane detailPane

fileChooser

javax.swing.JFileChooser fileChooser

channelName

java.lang.String channelName

mode

java.lang.String mode

imageSet

java.lang.String imageSet

testSet

java.lang.String testSet

imgWidth

int imgWidth

imgHeight

int imgHeight

Class annotool.gui.AnnotatorGUI extends javax.swing.JFrame implements Serializable

Serialized Fields

menuBar

AnnMenuBar menuBar

pnlLanding

LandingPanel pnlLanding

Class annotool.gui.AnnoTypePanel extends javax.swing.JPanel implements Serializable

Serialized Fields

gui

AnnotatorGUI gui

pnlRow1

javax.swing.JPanel pnlRow1

pnlRow2

javax.swing.JPanel pnlRow2

pnlDesc1

javax.swing.JPanel pnlDesc1

pnlDesc2

javax.swing.JPanel pnlDesc2

btnAnnotate

javax.swing.JButton btnAnnotate

btnROI

javax.swing.JButton btnROI

iconAnnotate

javax.swing.ImageIcon iconAnnotate

iconROI

javax.swing.ImageIcon iconROI

lbAnnotate

javax.swing.JLabel lbAnnotate

lbROI

javax.swing.JLabel lbROI

lbAnnotateSmall

javax.swing.JLabel lbAnnotateSmall

lbROISmall

javax.swing.JLabel lbROISmall

titleFont

java.awt.Font titleFont

Class annotool.gui.AnnOutputPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

output

javax.swing.JTextArea output

pane

javax.swing.JScrollPane pane

clearOutputB

javax.swing.JButton clearOutputB

workingFrame

java.lang.Object workingFrame

Class annotool.gui.AnnTablePanel extends javax.swing.JPanel implements Serializable

Serialized Fields

tableOneScrollPane

javax.swing.JScrollPane tableOneScrollPane

tableTwoScrollPane

javax.swing.JScrollPane tableTwoScrollPane

currentTestImageTable

AnnImageTable currentTestImageTable

currentCVTable

AnnImageTable currentCVTable

currentAnnotationTable

AnnImageTable currentAnnotationTable

frame

javax.swing.JFrame frame

classNames

java.util.HashMap<K,V> classNames

trainingProblem

DataInput trainingProblem

testingProblem

DataInput testingProblem

problem

DataInput problem

is3D

boolean is3D

isColor

boolean isColor

Class annotool.gui.AutoCompFrame extends PopUpFrame implements Serializable

Serialized Fields

tabPane

javax.swing.JTabbedPane tabPane

pnlMainOuter

javax.swing.JPanel pnlMainOuter

pnlMain

javax.swing.JPanel pnlMain

pnlAlgo

javax.swing.JPanel pnlAlgo

pnlExt

javax.swing.JPanel pnlExt

pnlSel

javax.swing.JPanel pnlSel

pnlClass

javax.swing.JPanel pnlClass

pnlExtMain

javax.swing.JPanel pnlExtMain

pnlSelMain

javax.swing.JPanel pnlSelMain

pnlClassMain

javax.swing.JPanel pnlClassMain

pnlExtBtn

javax.swing.JPanel pnlExtBtn

pnlSelBtn

javax.swing.JPanel pnlSelBtn

pnlClassBtn

javax.swing.JPanel pnlClassBtn

algoScrollPane

javax.swing.JScrollPane algoScrollPane

pnlChain

ChainPanel pnlChain

btnAddEx

javax.swing.JButton btnAddEx

btnAddSel

javax.swing.JButton btnAddSel

btnAddClass

javax.swing.JButton btnAddClass

lbExtractor

javax.swing.JLabel lbExtractor

lbSelector

javax.swing.JLabel lbSelector

lbClassifier

javax.swing.JLabel lbClassifier

cbExtractor

javax.swing.JComboBox cbExtractor

cbSelector

javax.swing.JComboBox cbSelector

cbClassifier

javax.swing.JComboBox cbClassifier

tabNumber

int tabNumber

exParamControls

java.util.HashMap<K,V> exParamControls

selParamControls

java.util.HashMap<K,V> selParamControls

classParamControls

java.util.HashMap<K,V> classParamControls

pnlOutput

AnnOutputPanel pnlOutput

Class annotool.gui.ButtonTabComponent extends javax.swing.JPanel implements Serializable

Serialized Fields

pane

javax.swing.JTabbedPane pane

label

javax.swing.JLabel label

button

javax.swing.JButton button

Class annotool.gui.ChainPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

pnlMain

javax.swing.JPanel pnlMain

pnlDetail

javax.swing.JPanel pnlDetail

pnlTable

javax.swing.JPanel pnlTable

pnlControl

javax.swing.JPanel pnlControl

pnlButton

javax.swing.JPanel pnlButton

pnlSouth

javax.swing.JPanel pnlSouth

tblChain

javax.swing.JTable tblChain

scrollPane

javax.swing.JScrollPane scrollPane

btnNew

javax.swing.JButton btnNew

btnRemove

javax.swing.JButton btnRemove

btnSaveChain

javax.swing.JButton btnSaveChain

btnLoadChain

javax.swing.JButton btnLoadChain

btnRun

javax.swing.JButton btnRun

btnSaveModel

javax.swing.JButton btnSaveModel

btnApplyModel

javax.swing.JButton btnApplyModel

checkSelect

javax.swing.JCheckBox checkSelect

tableModel

ChainTableModel tableModel

cFlag

boolean cFlag

taDetail

javax.swing.JTextArea taDetail

detailPane

javax.swing.JScrollPane detailPane

gui

AutoCompFrame gui

fileChooser

javax.swing.JFileChooser fileChooser

thread

java.lang.Thread thread

isRunning

boolean isRunning

channel

java.lang.String channel

bar

javax.swing.JProgressBar bar

pnlOutput

AnnOutputPanel pnlOutput

tca

TableColumnAdjuster tca

chainModels

ChainModel[] chainModels

executed

boolean executed

imgWidth

int imgWidth

imgHeight

int imgHeight

imgDepth

int imgDepth

imgStackSize

int imgStackSize

Class annotool.gui.DirectoryTreeDialogPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

fileL

javax.swing.JLabel fileL

imgextL

javax.swing.JLabel imgextL

dirField

javax.swing.JTextField dirField

filedir

javax.swing.JButton filedir

extBox

javax.swing.JComboBox extBox

testfileL

javax.swing.JLabel testfileL

testimgextL

javax.swing.JLabel testimgextL

testdirField

javax.swing.JTextField testdirField

testfiledir

javax.swing.JButton testfiledir

testextBox

javax.swing.JComboBox testextBox

loadImageB

javax.swing.JButton loadImageB

combinedLoadImageB

javax.swing.JButton combinedLoadImageB

cancelB

javax.swing.JButton cancelB

pnlLanding

LandingPanel pnlLanding

pnlImage

ImageReadyPanel pnlImage

fileChooser

javax.swing.JFileChooser fileChooser

dialog

LoadImageDialog dialog

Class annotool.gui.ExpertFrame extends PopUpFrame implements Serializable

Serialized Fields

tabPane

javax.swing.JTabbedPane tabPane

pnlMain

javax.swing.JPanel pnlMain

pnlAlgo

javax.swing.JPanel pnlAlgo

pnlExt

javax.swing.JPanel pnlExt

pnlSel

javax.swing.JPanel pnlSel

pnlClass

javax.swing.JPanel pnlClass

pnlExtMain

javax.swing.JPanel pnlExtMain

pnlSelMain

javax.swing.JPanel pnlSelMain

pnlClassMain

javax.swing.JPanel pnlClassMain

pnlButton

javax.swing.JPanel pnlButton

btnRun

javax.swing.JButton btnRun

btnSaveModel

javax.swing.JButton btnSaveModel

btnAnnotate

javax.swing.JButton btnAnnotate

lbExtractor

javax.swing.JLabel lbExtractor

lbSelector

javax.swing.JLabel lbSelector

lbClassifier

javax.swing.JLabel lbClassifier

cbExtractor

javax.swing.JComboBox cbExtractor

cbSelector

javax.swing.JComboBox cbSelector

cbClassifier

javax.swing.JComboBox cbClassifier

channel

java.lang.String channel

bar

javax.swing.JProgressBar bar

tabNumber

int tabNumber

extractor

Algorithm extractor

selector

Algorithm selector

classifier

Algorithm classifier

exParamControls

java.util.HashMap<K,V> exParamControls

selParamControls

java.util.HashMap<K,V> selParamControls

classParamControls

java.util.HashMap<K,V> classParamControls

exParams

java.util.HashMap<K,V> exParams

selParams

java.util.HashMap<K,V> selParams

classParams

java.util.HashMap<K,V> classParams

featureExtractor

java.lang.String featureExtractor

featureSelector

java.lang.String featureSelector

classifierChoice

java.lang.String classifierChoice

anno

annotool.Annotator anno

pnlOutput

AnnOutputPanel pnlOutput

thread

java.lang.Thread thread

isRunning

boolean isRunning

fileChooser

javax.swing.JFileChooser fileChooser

enableSave

boolean enableSave

imgWidth

int imgWidth

imgHeight

int imgHeight

imgDepth

int imgDepth

imgStackSize

int imgStackSize

Class annotool.gui.ImageReadyPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

pnlRight

javax.swing.JPanel pnlRight

pnlRightCenter

javax.swing.JPanel pnlRightCenter

pnlDynamic

javax.swing.JPanel pnlDynamic

pnlLegends

javax.swing.JPanel pnlLegends

pnlModeInfo

javax.swing.JPanel pnlModeInfo

pnlChannel

javax.swing.JPanel pnlChannel

pnlButton

javax.swing.JPanel pnlButton

pnlROIParam

ROIParameterPanel pnlROIParam

channelFlag

boolean channelFlag

lbModeInfo

javax.swing.JLabel lbModeInfo

rbRed

javax.swing.JRadioButton rbRed

rbGreen

javax.swing.JRadioButton rbGreen

rbBlue

javax.swing.JRadioButton rbBlue

btnSimple

javax.swing.JButton btnSimple

btnAutoComp

javax.swing.JButton btnAutoComp

btnLoadModel

javax.swing.JButton btnLoadModel

btnApplyModel

javax.swing.JButton btnApplyModel

btnSaveReport

javax.swing.JButton btnSaveReport

btnViewModels

javax.swing.JButton btnViewModels

channels

java.lang.String[] channels

channelInputs

java.lang.String[] channelInputs

pnlStatus

AnnOutputPanel pnlStatus

pnlTable

AnnTablePanel pnlTable

gui

AnnotatorGUI gui

modelInfo

java.lang.String modelInfo

is3D

boolean is3D

openFrameCount

int openFrameCount

loader

ModelLoader loader

fileChooser

javax.swing.JFileChooser fileChooser

modelFilter

ModelFilter modelFilter

pdfFilter

PDFFilter pdfFilter

openFrames

java.util.ArrayList<E> openFrames

Class annotool.gui.LandingPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

pnlMainScreen

javax.swing.JPanel pnlMainScreen

pnlModeSelect

javax.swing.JPanel pnlModeSelect

pnlRow1

javax.swing.JPanel pnlRow1

pnlRow2

javax.swing.JPanel pnlRow2

pnlRow3

javax.swing.JPanel pnlRow3

pnlDesc1

javax.swing.JPanel pnlDesc1

pnlDesc2

javax.swing.JPanel pnlDesc2

pnlDesc3

javax.swing.JPanel pnlDesc3

pnlBtnContainer

javax.swing.JPanel pnlBtnContainer

pnlModeBox

javax.swing.JPanel pnlModeBox

pnlFoldBox

javax.swing.JPanel pnlFoldBox

pnlSpinner

javax.swing.JPanel pnlSpinner

pnlImages

ImageReadyPanel pnlImages

btnModelSelect

javax.swing.JButton btnModelSelect

btnTrain

javax.swing.JButton btnTrain

btnAnnotate

javax.swing.JButton btnAnnotate

btnLoadImages

javax.swing.JButton btnLoadImages

iconMS

javax.swing.ImageIcon iconMS

iconTrain

javax.swing.ImageIcon iconTrain

iconAnnotate

javax.swing.ImageIcon iconAnnotate

lbMS

javax.swing.JLabel lbMS

lbTrain

javax.swing.JLabel lbTrain

lbAnnotate

javax.swing.JLabel lbAnnotate

lbMSSmall

javax.swing.JLabel lbMSSmall

lbTrainSmall

javax.swing.JLabel lbTrainSmall

lbAnnotateSmall

javax.swing.JLabel lbAnnotateSmall

lbSpinner

javax.swing.JLabel lbSpinner

rbTT

javax.swing.JRadioButton rbTT

rbCV

javax.swing.JRadioButton rbCV

cbLoo

javax.swing.JCheckBox cbLoo

cbShuffle

javax.swing.JCheckBox cbShuffle

spFold

javax.swing.JSpinner spFold

titleFont

java.awt.Font titleFont

gui

AnnotatorGUI gui

Class annotool.gui.LegendDialog extends javax.swing.JDialog implements Serializable

Class annotool.gui.LoadImageDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

tabbedPane

javax.swing.JTabbedPane tabbedPane

targetTab

java.lang.String targetTab

dirTab

java.lang.String dirTab

roiTab

java.lang.String roiTab

Class annotool.gui.PopUpFrame extends javax.swing.JFrame implements Serializable

Serialized Fields

chainModels

ChainModel[] chainModels

applyModelFired

boolean applyModelFired

trainingProblem

DataInput trainingProblem

testingProblem

DataInput testingProblem

Class annotool.gui.ResultPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

tabIndex

int tabIndex

recogRate

float recogRate

targets

int[] targets

maxTestingSample

int maxTestingSample

results

annotool.Annotation[] results

labels

java.util.ArrayList<E> labels

confusionMatrix

java.lang.Integer[][] confusionMatrix

numClasses

int numClasses

bestRate

double bestRate

worstRate

double worstRate

bestIndex

int bestIndex

worstIndex

int worstIndex

bestLabels

java.lang.StringBuffer bestLabels

worstLabels

java.lang.StringBuffer worstLabels

parentPane

javax.swing.JTabbedPane parentPane

lbHorizontal

javax.swing.JLabel lbHorizontal

lbVertical

javax.swing.JLabel lbVertical

lbTitle

javax.swing.JLabel lbTitle

table

javax.swing.JTable table

scrollPane

javax.swing.JScrollPane scrollPane

pnlMatrix

javax.swing.JPanel pnlMatrix

pnlTableContainer

javax.swing.JPanel pnlTableContainer

pnlDescription

javax.swing.JPanel pnlDescription

pnlChart

org.jfree.chart.ChartPanel pnlChart

pnlCM

javax.swing.JPanel pnlCM

pnlChartContainer

javax.swing.JPanel pnlChartContainer

df

java.text.DecimalFormat df

Class annotool.gui.RoiModeDialogPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

lbRoiFiles

javax.swing.JLabel lbRoiFiles

lbImageFile

javax.swing.JLabel lbImageFile

txtRoiFiles

javax.swing.JTextField txtRoiFiles

txtImageFile

javax.swing.JTextField txtImageFile

btnBrowseRoi

javax.swing.JButton btnBrowseRoi

btnBrowseImage

javax.swing.JButton btnBrowseImage

lbTestRoiFiles

javax.swing.JLabel lbTestRoiFiles

lbTestImageFile

javax.swing.JLabel lbTestImageFile

txtTestRoiFiles

javax.swing.JTextField txtTestRoiFiles

txtTestImageFile

javax.swing.JTextField txtTestImageFile

btnBrowseTestRoi

javax.swing.JButton btnBrowseTestRoi

btnBrowseTestImage

javax.swing.JButton btnBrowseTestImage

btnLoad

javax.swing.JButton btnLoad

btnLoadCombined

javax.swing.JButton btnLoadCombined

btnCancel

javax.swing.JButton btnCancel

spinnerw

javax.swing.JSpinner spinnerw

checkBoxNeww

javax.swing.JCheckBox checkBoxNeww

spinnerh

javax.swing.JSpinner spinnerh

checkBoxNewh

javax.swing.JCheckBox checkBoxNewh

spinner

javax.swing.JSpinner spinner

checkBox3d

javax.swing.JCheckBox checkBox3d

depth

int depth

newwidth

int newwidth

newheight

int newheight

pnlLanding

LandingPanel pnlLanding

pnlImage

ImageReadyPanel pnlImage

fileChooser

javax.swing.JFileChooser fileChooser

dialog

LoadImageDialog dialog

roiPaths

java.lang.String[] roiPaths

testRoiPaths

java.lang.String[] testRoiPaths

Class annotool.gui.ROIParameterPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

lbInterval

javax.swing.JLabel lbInterval

lbPadMode

javax.swing.JLabel lbPadMode

slider

javax.swing.JSlider slider

rbNone

javax.swing.JRadioButton rbNone

rbSymmetric

javax.swing.JRadioButton rbSymmetric

cbExport

javax.swing.JCheckBox cbExport

cbMaxima

javax.swing.JCheckBox cbMaxima

lbExportDir

javax.swing.JLabel lbExportDir

btnSelectDir

javax.swing.JButton btnSelectDir

exportDir

java.lang.String exportDir

fileChooser

javax.swing.JFileChooser fileChooser

Class annotool.gui.ROITagger extends javax.swing.JDialog implements Serializable

Serialized Fields

pnlStatus

AnnOutputPanel pnlStatus

imp

ij.ImagePlus imp

btnLoadImg

javax.swing.JButton btnLoadImg

btnLoadROI

javax.swing.JButton btnLoadROI

btnSave

javax.swing.JButton btnSave

btnTemp

javax.swing.JButton btnTemp

btn3DROITrain

javax.swing.JButton btn3DROITrain

btn3DROITest

javax.swing.JButton btn3DROITest

fileChooser

javax.swing.JFileChooser fileChooser

Class annotool.gui.TargetFileDialogPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

fileL

javax.swing.JLabel fileL

imgextL

javax.swing.JLabel imgextL

targetL

javax.swing.JLabel targetL

dirField

javax.swing.JTextField dirField

targetField

javax.swing.JTextField targetField

filedir

javax.swing.JButton filedir

extBox

javax.swing.JComboBox extBox

targetFile

javax.swing.JButton targetFile

testfileL

javax.swing.JLabel testfileL

testimgextL

javax.swing.JLabel testimgextL

testtargetL

javax.swing.JLabel testtargetL

testdirField

javax.swing.JTextField testdirField

testtargetField

javax.swing.JTextField testtargetField

testfiledir

javax.swing.JButton testfiledir

testextBox

javax.swing.JComboBox testextBox

testtargetFile

javax.swing.JButton testtargetFile

loadImageB

javax.swing.JButton loadImageB

combinedLoadImageB

javax.swing.JButton combinedLoadImageB

cancelB

javax.swing.JButton cancelB

pnlLanding

LandingPanel pnlLanding

pnlImage

ImageReadyPanel pnlImage

fileChooser

javax.swing.JFileChooser fileChooser

testingTarget

boolean testingTarget

roiFlag

boolean roiFlag

multiFiles

java.lang.String[] multiFiles

dialog

LoadImageDialog dialog

Package annotool.gui.model

Class annotool.gui.model.ChainTableModel extends javax.swing.table.AbstractTableModel implements Serializable

Serialized Fields

DEBUG

boolean DEBUG

columnNames

java.lang.String[] columnNames

items

java.util.List<E> items

Overview

Package

Class

Use

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Deprecated

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